The Trout You’ve Never Heard Of (and Almost Never Did)

By Craig Springer, Guest Blogger

The trout stole its color from a southern New Mexico summer sunset. Gila trout sport a painter’s pallet of pink and olive, rose, yellow, copper—and a few tones in between. Beneath the black pepper flakes that fleck its side lies a lexis—a language carried forward from another time. It’s an ancient language coded in molecules of proteins written by the press of time and experience in a land turned arid.

Gila trout, native only to headwater streams that vein over the Mogollon Rim of New Mexico and Arizona, have in their genetic makeup a map for surviving in the vestiges of what was likely a large and contiguous range. Their genetics equip them to face what nature may hurl at them in an already harsh environment.

It’s those innate characteristics, coiled in the double-helix of DNA, that U.S. Fish and Wildlife Service biologists strive to preserve in the fish.

Conservation genetics is at its heart an investment in the future with an eye on the past. Dr. Wade Wilson with the Southwestern Native Aquatic Resources and Recovery Center in Dexter, New Mexico, knows Gila trout like few others can; he’s a geneticist and can decode the language. He’s charged with ensuring the genetic diversity of future Gila trout.


Wilson works adjunct with another USFWS facility in New Mexico—the Mora National Fish Hatchery—where captive stocks of the rare yellow trout are held. Hatchery biologists are fully immersed in Gila trout captive breeding: it’s done smartly, carefully, and through the consult of Wilson.

“We monitor genetic diversity in captive trout to ensure that what we have in the hatchery represents what we have in the wild,” said Wilson.

That mixture is essential for the future.

“The more genetic diversity that exists among the fish, the better chance those future generations of Gila trout can adapt to changing environments and stressors and diseases in wild populations,” Wilson said.

“Here’s how we get it done,” explains an enthusiastic Nate Wiese, Mora’s manager and lead fisheries scientist. “Each fish gets a microchip injected just under the skin just like your vet can do for your dog. That chip gives each fish a personal ID, like a social security number. Knowing each fish at an individual level is a first step in securing the future of Gila trout.”

With every captive fish in the hatchery marked, biologists take non-lethal tissue samples from the fish via a tiny piece of fin. From there, it’s up to Wilson and his staff to use cutting-edge technology to look deep at each fish—at the molecular level.

Wilson will pinpoint the captive individual with the rarest of genetics and suggest what Wiese calls “pair-wise spawns.” It’s akin to arranged marriages, but with the express scientific purpose of ensuring the rare genetic characters found by Wilson are carried into the next generation. Males and females that differ among various genes make the best partners.

The Gila trout was described by science a mere 65 years ago. Through much of the intervening 50 years, it had been closed by law to angling as the fish stared at extinction. Its lot improved with conservation, and it was down-listed from “endangered” to “threatened” in 2006. Fishing opened a year later.

So it remains, threatened and fishable, despite a welter of catastrophic wild fires—the sort that makes the evening network news broadcast for days on end.

“An integral part of the conservation strategy calls to replicate in the wild the distinct genetic lineages,” said Wiese. It’s a measure of conservation security to give a geographic spread between populations.

“But what happens when a massive fire threatens to gobble up the original and replicate populations? The hatchery is the back up,” Wiese said.

Fire is hard on trout, particularly when a mountain stream turns into a slush of ash slurry after the first post-fire rain. The Whitewater-Baldy Fire that decimated the Gila Wilderness in 2012 necessitated a trout rescue ahead of such circumstances. New Mexico Fish and Wildlife Conservation Office biologist Dustin Myers, based in Albuquerque, led rescues involving pack horses, helicopters, and hatchery trucks from streams sure to be slugged by ash.

South Diamond repatriation (1)

Mora National Fish Hatchery is now home to the only known population of the Spruce Creek lineage of Gila trout. Three other strains are held there, too: Main Diamond Creek, Whiskey Creek and South Diamond Creek lineages.

Aside from the robust genetics plans that steer captive breeding, Wiese manages the hatchery to produce Gila trout conditioned toward a wild environment. Instead of growing lazy trout as fat as toads, the fish are conditioned in a captive environment that mimics nature—complete with boulders, plants and fast-flowing water.

“We get them off the couch and on a treadmill,” said Wiese. “They are going to be better suited for real streams. It’s like tough-love for your children.”

Those real streams are still healing from the 2012 fire and the Silver Fire that scorched headwaters atop the Black Range in 2013. Fish will begin returning to them this autumn.

Myers makes the call on which streams are ready for trout.

“Since the Whitewater-Baldy Fire we’ve replicated Whiskey Creek lineage in McKenna Creek and Upper White Creek,” said Myers. “Whiskey fish will also go into Sacaton Creek this year. But Whiskey Creek itself is still healing and we have to wait for habitat conditions to improve.”

Guarding Gila trout waters from mongrel or nonnative trouts is the other half of the coin. These fishes could compromise the genetic integrity of pure lineages by interbreeding with their Gila cousins.

Barriers, made on site, or natural waterfalls are a means of segregating fishes. Toward that end, Myers recently worked with the Forest Service to restore a vital barrier—a natural waterfall—by blasting out lodged boulders. The blast allowed 21 miles of prime Gila trout habitat in the West Fork Gila to remain free of unwanted fishes.


The lack of habitat has been a vexation in Gila trout conservation, but science, married with the resolve of individuals who care about this beautiful trout, is a way forward. The spectrum of pigments reflected by a wet Gila trout call to mind Emerson:  “If eyes were made for seeing, then beauty is its own excuse for being.” The fish’s beauty is richer than what strikes the eye: it’s that Gila trout sheltered in a hatchery and those facing the rigors of the wild still carry the genetic impressions of the past.

This article has been reprinted from Sporting Classics Daily.

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